Sunday, 25 October 2015

LAB 3: PREPARATION AND STERILIZATION OF CULTURE MEDIA

INTRODUCTION

Microbes require nutrients to grow. Therefore, for microorganisms culturing, we need to prepare a culture media to provide them enough nutrients to surviveCulturing organisms with specific nutritional (or even environmental) needs requires special purpose media. There are different types of culture media suitable for growing different types of cells, such as basal, enriched, selective, differential, transport and storage media. A standard solid culture media is nutrient agar or agar plates. Agar is polysaccharide extract obtained from seaweed. Agar is an ideal solidifying agent as it is bacteriologically inert, no influence on bacterial growth, it remains solid at 37°C and it is transparent. The broth contain:
5.0g/L peptone
1.5g/L beef extract
5.0g/L sodium chloride, NaCI
1.5g/L yeast extract
15.0g/L agar powder

Autoclaving is a method used in sterilization process. It is conducted by using of pressurized steam at specific condition: 121°C and 15 psi for 15 minutes, to kill infectious agents and denature protein thus causing thus causing destruction of all types of microorganisms, excluding some sporeformers. The pressurized steam produce a heat called ‘wet heat’ which has large amount of vaporisation heat capacity is sufficient and efficient to destroy microorganisms inside the autoclave chamber. Hence, it is commonly used to sterile laboratory glassware, other equipment and waste, surgical instruments and medical waste.
Autoclaving machine


OBJECTIVE
To prepare sterile nutrient agar for culturing microorganisms

Materials and reagents
Commercial nutrient agar
Balance
Distilled water
Scott bottles
Spatula
Brain Heart Infusion Broth agar (BHI)
Trypticase Soy Broth agar (TSAYE)
Beef extract
Yeast extract       
Peptone
Sodium chloride
Agar powder



Procedure
Commercial Nutrient Agar Preparation
1.       11.2g of commercial nutrient agar powder was weighed and poured into a 500ml beaker.
2.       400ml of distilled water was measured by using 1000ml measuring cylinder and poured into beaker which contained the commercial nutrient agar powder.
3.       The mixture was stirred by using spatula until the powder dissolved completely.
4.       The mixture was poured into a labelled scott bottle.
5.       The scott bottle was loosely recapped and autoclaved at 121°C/15psi for 15 minutes.

6.       The media was removed after autoclaving and was allowed to cool before tighten the cap of the scott bottle.

Self-Made Nutrient Agar Preparation
1)      6.0g of agar powder, 0.6g of beef extract, 0.6g of yeast extract, 2.0g of peptone and 2.0g of sodium chloride was weighed and poured into a 500ml beaker.
2)      400ml of distilled water was measured by using 1000ml measuring cylinder and poured into beaker which contained the mixture of powders.
3)      The mixture was stirred by using spatula until the powder dissolved completely.
4)      The mixture was poured into a labelled scott bottle.
5)      The scott bottle was loosely recapped and autoclaved at 121°C/15psi for 15 minutes.
6)      The media was removed after autoclaving and was allowed to cool before tighten the cap of the scott bottle.

Brain Heart Infusion Agar (BHI) and Trypticase Soy Agar (TSAYE) Preparation
1.       5.2g of Brain Heart Infusion Agar (BHI) powder was weighed and poured into a 250ml beaker.
2.       100ml of distilled water was measured by using measuring cylinder and poured into beaker which contained the powder.
3.       The mixture was stirred by using spatula until the powder dissolved completely.
4.       The mixture was poured into a labelled scott bottle.
5.       The scott bottle was loosely recapped and autoclaved at 121°C/15psi for 15 minutes.
6.       The media was removed after autoclaving and was allowed to cool before tighten the cap of the scott bottle.
These steps were repeated by using Trypticase Soy Agar (TSAYE) powder.


Result

The recipe for preparing the self-made nutrient agar is:
Beef extract 1.5g/L
Yeast extract 1.5g/L      
Peptone 5.0g/L
Sodium chloride 5.0g/L
Agar powder 15g/L

For preparing 400ml self made nutrient agar, 0.6g beef extract, 0.6g yeast extract, 2.0g peptone, 2.0g sodium chloride and 6.0g agar powder are mixed with 400ml distilled water.

The others culture media that have been prepared are 400 ml commercial nutrient agar (by mixing 11.2g agar powder with 400ml distilled water), 100ml BHI agar (by mixing 5.2g agar powder with 100ml distilled water) and 100ml TSAYE agar (by mixing 4g agar powder with 100ml distilled water).

Discussion
There are certain precautions that have to be taken during the experiment, including of:
1.     All the scott bottles have to be labelled first.
2.     The surface of balance must be cleaned before weighing any powder to ensure the accurate quantity of powder can be obtained.
3.     All scott bottles must rinsed with distilled water and be in dry condition before using.
4.     The media should be stirred evenly by spatula before pouring into the scott bottles to ensure the powders mix well with distilled water.
5.     Before autoclaving, the caps of the scott bottles should be loosen to prevent them from breaking due to the high pressure during autoclaving.
6.     The autoclaving machine has to be closed tightly the the media can be sterilised at 121 °C.
7.     After autoclaving, the media are cooled down and the caps of scott bottles are closed tightly.

Conclusion
In this experiment, we learned the importance of sterilization of culture media and the process of preparing these culture media. One of the ways to sterilize the culture media is by autoclaving.  Sterilization of culture media is important to prevent the contamination of other microorganisms.

Reference
http://www.microbeworld.org/careers/tools-of-the-trade/culture-equipment/culture-media
https://www.boundless.com/microbiology/textbooks/boundless-microbiology-textbook/culturing-microorganisms-6/culturing-bacteria-58/culture-media-364-5325/
http://medical-dictionary.thefreedictionary.com/autoclave

Sunday, 11 October 2015

LAB 2:MEASUREMENT AND COUNTING OF CELLS USING MICROSCOPE




2.1 Ocular Micrometer

Introduction
An ocular micrometer is a glass disc with the ruled scale which can fit in eyepiece of microscope. It is used to measure the exact size of an object. It must be calibrated with a stage micrometer to determine the precise distance between the lines of ocular micrometer. The correct method to use the ocular and stage micrometer is rotate one of the microscope eyepiece until the lines of the ocular micrometer are parallel with the lines of stage micrometer. Then, the position of stage micrometer is adjusted until the graduations of the ocular micrometer are superimposed over those of the stage micrometer. The exact distance of each ocular division can be counted by determining the number of ocular micrometer spaces that fall within a given number of stage micrometer spaces. The stage micrometer will be then replaced by the slide with specimen to measure the length and width of that cell.

Objective
To measure the dimensions of cell using microscope
To learn the correct method of using ocular micrometer and stage micrometer

Materials and reagents
Microscope fitted with an ocular micrometer, slide micrometer, stained preparations of yeast 

Procedure
(Refer to lab manual)

Results


The dimension of the yeast
For 10 x objective lens, 1mm is equal to 9.6 ocular divisions
For 40 x objective lens, 0.1mm is equal to 8.0 ocular divisions

The length of the yeast:
8 ocular unit= 0.1mm
0.4 ocular unit= 0.005mm
                      =5.0µm

The width of the yeast:
8 ocular units= 0.1mm
0.5ocular unit= 0.0063mm
                     =6.3µm

Discussion
In order to measure the size of the cell, the ocular micrometer must be calibrated with stage micrometer to get the correct scale to measure the microorganisms. This is due to the appearance of image in ocular micrometre will not change with the change of magnification but scale on stage micrometre will change with the change in of magnification. In this experiment, parallax errors should be prevented when calibrate the ocular micrometre with the stage micrometer and also each time when measuring the size of the cell.

Conclusion
Through this experiment, we know the importance of using the ocular micrometre in determining the specific size of the cell and the correct method to use it together with stage micrometer. The length of yeast is 0.005mm and the width of yeast is 0.0063mm.

Reference

https://en.wikipedia.org/wiki/Ocular_micrometer


2.2 Neubauer Chamber

Introduction
The Neubauer chamber (hemocytometer) is a thick crystal slide with the size of a glass slide (30mm x 70mm x 4mm thickness). It is used to count cells and to determine the concentration of cells. The chamber has three parts (central part, upper chamber and lower chamber). At the central part, there is a counting grid on the glass. The upper chamber and lower chamber are the counting areas. There is a special glass cover placed on the top of the Neubabuer chamber which will cover the central area.



Materials and Reagents
Dilutions of yeast cultures, neubauer and coverslip, sterile Pasteur pipettes

Procedure
(Refer to lab manual)

Results



10


28

40
26



11

19
23

24
Total cells in the random 8 boxes
= 10+19+40+23+26+11+28+24
=181cells

Average number of yeast cells per boxes
=181/ 8
=22.625 cells per boxes

Volume of one box
=0.25mm x 0.25mm x 0.1mm
=6.25 x 10-3mm3
=6.25 x 10-6 ml
After dilution
=6.25 x 10-7 ml

Concentration of cells
=22.625/ (6.25 x 10-7ml)
=36200000cells/ml

=3.62 x 10cells/ml

Discussion
The middle large square has the length of 1mm, width of 1mm and depth of 0.1 mm. Inside the large square there was 16 smaller squares, each with the size of 0.25mm x 0.25mm. About 8 of the smaller square were taken randomly and the cells were counted in each of those smaller squares. The average number of the yeast is 22.625 cells per box. By using the formula of cells concentration, the concentration of the cells is 3.62 x 10cells/ml.

Conclusion
Naubauer Chamber is a special slide made to count the cell in drop of specimen and in estimating the concentration of cell in unit of cell/ml. In this experiment, the concentration of the cell is 3.62 x 107cells/ml.

Reference